HL_9SYH_057

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

U(1MG)(PSU)(5MU)GAAAAA

Length

10 nucleotides

Bulged bases

9SYH|1|a|5MU|747, 9SYH|1|a|A|751, 9SYH|1|a|A|752

QA status

Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYH|1|a|U|744
9SYH|1|a|1MG|745
9SYH|1|a|PSU|746
9SYH|1|a|5MU|747
9SYH|1|a|G|748
9SYH|1|a|A|749
9SYH|1|a|A|750
9SYH|1|a|A|751
9SYH|1|a|A|752
9SYH|1|a|A|753

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain d

Large ribosomal subunit protein uL3

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32