HL_9SYH_076

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

9SYH|1|a|U|1729, 9SYH|1|a|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYH_076 not in the Motif Atlas

Geometric match to HL_8P9A_179

Geometric discrepancy: 0.2896

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_58375.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9SYH|1|a|C|1727
9SYH|1|a|C|1728
9SYH|1|a|U|1729
9SYH|1|a|C|1730
9SYH|1|a|G|1731
9SYH|1|a|C|1732
9SYH|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains