HL_9SYH_098

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYH_098 not in the Motif Atlas

Homologous match to HL_7A0S_064

Geometric discrepancy: 0.1263

The information below is about HL_7A0S_064

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_12125.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9SYH|1|a|U|2701
9SYH|1|a|G|2702
9SYH|1|a|C|2703
9SYH|1|a|C|2704
9SYH|1|a|A|2705
9SYH|1|a|A|2706

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17