HL_9T0Y_038

3D structure

PDB id

9T0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

9T0Y|1|a|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T0Y_038 not in the Motif Atlas

Homologous match to HL_7A0S_003

Geometric discrepancy: 0.1562

The information below is about HL_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9T0Y|1|a|G|123
9T0Y|1|a|G|124
9T0Y|1|a|A|125
9T0Y|1|a|A|126
9T0Y|1|a|A|127
9T0Y|1|a|C|128

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23