HL_9T1H_005

3D structure

PDB id

9T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-RlmE strain, PTC class 7

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

9T1H|1|a|U|958, 9T1H|1|a|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T1H_005 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1865

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9T1H|1|a|PSU|955
9T1H|1|a|G|956
9T1H|1|a|C|957
9T1H|1|a|U|958
9T1H|1|a|A|959
9T1H|1|a|A|960
9T1H|1|a|C|961
9T1H|1|a|G|962

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

Large ribosomal subunit protein uL16