HL_9T2K_011

3D structure

PDB id

9T2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain, PTC class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T2K_011 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.1867

The information below is about HL_7A0S_061

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9T2K|1|a|C|2551
9T2K|1|a|OMU|2552
9T2K|1|a|G|2553
9T2K|1|a|U|2554
9T2K|1|a|U|2555
9T2K|1|a|C|2556
9T2K|1|a|G|2557

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA