HL_9T2N_006

3D structure

PDB id

9T2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain, PTC class 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T2N_006 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2121

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9T2N|1|a|G|978
9T2N|1|a|A|979
9T2N|1|a|A|980
9T2N|1|a|A|981
9T2N|1|a|C|982
9T2N|1|a|A|983
9T2N|1|a|A|984
9T2N|1|a|C|985

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

Large ribosomal subunit protein bL21