HL_9T2N_010

3D structure

PDB id

9T2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain, PTC class 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9T2N|1|a|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T2N_010 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1354

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9T2N|1|a|C|2248
9T2N|1|a|U|2249
9T2N|1|a|G|2250
9T2N|1|a|G|2251
9T2N|1|a|G|2252
9T2N|1|a|G|2253
9T2N|1|a|C|2254
9T2N|1|a|G|2255
9T2N|1|a|G|2256

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27