HL_9T5X_007

3D structure

PDB id

9T5X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T5X_007 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2448

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9T5X|1|A|A|320
9T5X|1|A|A|321
9T5X|1|A|C|322
9T5X|1|A|U|323
9T5X|1|A|G|324
9T5X|1|A|A|325
9T5X|1|A|G|326
9T5X|1|A|A|327
9T5X|1|A|C|328
9T5X|1|A|A|329
9T5X|1|A|C|330
9T5X|1|A|G|331
9T5X|1|A|G|332
9T5X|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20