HL_9T5X_030
3D structure
- PDB id
- 9T5X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- CAGCGUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9T5X|1|Y|C|16, 9T5X|1|Y|G|19, 9T5X|1|Y|G|20, 9T5X|1|Y|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9T5X_030 not in the Motif Atlas
- Homologous match to HL_7MRL_001
- Geometric discrepancy: 0.174
- The information below is about HL_7MRL_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9T5X|1|Y|C|13
9T5X|1|Y|A|14
9T5X|1|Y|G|15
9T5X|1|Y|C|16
9T5X|1|Y|G|17
9T5X|1|Y|U|18
9T5X|1|Y|G|19
9T5X|1|Y|G|20
9T5X|1|Y|U|21
9T5X|1|Y|A|22
9T5X|1|Y|G|23
Current chains
- Chain Y
- A-site tRNA-Pro
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: