HL_9T61_008

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T61_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1298

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9T61|1|A|G|317
9T61|1|A|A|318
9T61|1|A|C|319
9T61|1|A|U|320
9T61|1|A|G|321
9T61|1|A|A|322
9T61|1|A|G|323
9T61|1|A|A|324
9T61|1|A|C|325
9T61|1|A|A|326
9T61|1|A|C|327
9T61|1|A|G|328
9T61|1|A|G|329
9T61|1|A|C|330

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20