HL_9T61_028

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T61_028 not in the Motif Atlas

Homologous match to HL_6CZR_099

Geometric discrepancy: 0.1768

The information below is about HL_6CZR_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T61|1|A|C|1262
9T61|1|A|G|1263
9T61|1|A|C|1264
9T61|1|A|G|1265
9T61|1|A|A|1266
9T61|1|A|G|1267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL31

Chain M

Small ribosomal subunit protein uS13

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19