HL_9T6M_020

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GAU(2MG)(5MC)AACGC

Length

10 nucleotides

Bulged bases

9T6M|1|A|G|971

QA status

Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T6M|1|A|G|963
9T6M|1|A|A|964
9T6M|1|A|U|965
9T6M|1|A|2MG|966
9T6M|1|A|5MC|967
9T6M|1|A|A|968
9T6M|1|A|A|969
9T6M|1|A|C|970
9T6M|1|A|G|971
9T6M|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain M

Small ribosomal subunit protein uS13

Chain Y

Transfer RNA; tRNA

Chain Z

Transfer RNA; tRNA