HL_9T6M_045

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

9T6M|1|a|U|321, 9T6M|1|a|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T6M_045 not in the Motif Atlas

Geometric match to HL_8B0X_042

Geometric discrepancy: 0.0538

The information below is about HL_8B0X_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9T6M|1|a|G|319
9T6M|1|a|A|320
9T6M|1|a|U|321
9T6M|1|a|A|322
9T6M|1|a|C|323

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4