HL_9T7H_002

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGUCAAC

Length

7 nucleotides

Bulged bases

9T7H|1|1|U|55, 9T7H|1|1|C|56, 9T7H|1|1|A|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T7H_002 not in the Motif Atlas

Geometric match to HL_8HNT_002

Geometric discrepancy: 0.323

The information below is about HL_8HNT_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

9T7H|1|1|G|53
9T7H|1|1|G|54
9T7H|1|1|U|55
9T7H|1|1|C|56
9T7H|1|1|A|57
9T7H|1|1|A|58
9T7H|1|1|C|59

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain AJ

30S ribosomal protein S8e