HL_9T7H_027

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9T7H|1|1|A|1032, 9T7H|1|1|G|1035

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T7H_027 not in the Motif Atlas

Homologous match to HL_4V9F_025

Geometric discrepancy: 0.0883

The information below is about HL_4V9F_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

9T7H|1|1|U|1030
9T7H|1|1|G|1031
9T7H|1|1|A|1032
9T7H|1|1|A|1033
9T7H|1|1|A|1034
9T7H|1|1|G|1035
9T7H|1|1|G|1036

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2