HL_9T7H_063

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

C(4AC)GAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T7H_063 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2512

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9T7H|1|1|C|2607
9T7H|1|1|4AC|2608
9T7H|1|1|G|2609
9T7H|1|1|A|2610
9T7H|1|1|A|2611
9T7H|1|1|A|2612
9T7H|1|1|G|2613
9T7H|1|1|G|2614

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BO

Large ribosomal subunit protein uL18

Chain BR

Large ribosomal subunit protein eL21

Chain Bj

Large ribosomal subunit protein eL42