HL_9T8T_002

3D structure

PDB id

9T8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain, PTC class 9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

U(1MG)(PSU)(5MU)GAAAAA

Length

10 nucleotides

Bulged bases

9T8T|1|a|5MU|747, 9T8T|1|a|A|751, 9T8T|1|a|A|752

QA status

Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T8T|1|a|U|744
9T8T|1|a|1MG|745
9T8T|1|a|PSU|746
9T8T|1|a|5MU|747
9T8T|1|a|G|748
9T8T|1|a|A|749
9T8T|1|a|A|750
9T8T|1|a|A|751
9T8T|1|a|A|752
9T8T|1|a|A|753

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain e

Large ribosomal subunit protein uL4

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32