HL_9TEX_007

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEX_007 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1345

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9TEX|1|A|A|320
9TEX|1|A|A|321
9TEX|1|A|C|322
9TEX|1|A|U|323
9TEX|1|A|G|324
9TEX|1|A|A|325
9TEX|1|A|G|326
9TEX|1|A|A|327
9TEX|1|A|C|328
9TEX|1|A|A|329
9TEX|1|A|C|330
9TEX|1|A|G|331
9TEX|1|A|G|332
9TEX|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20