HL_9TEX_024

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9TEX|1|A|C|1136, 9TEX|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEX_024 not in the Motif Atlas

Geometric match to HL_8B0X_023

Geometric discrepancy: 0.169

The information below is about HL_8B0X_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

9TEX|1|A|G|1134
9TEX|1|A|U|1135
9TEX|1|A|C|1136
9TEX|1|A|C|1137
9TEX|1|A|G|1138
9TEX|1|A|G|1139
9TEX|1|A|C|1140

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9