HL_9TEX_031
3D structure
- PDB id
- 9TEX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dal2 bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9TEX|1|Z|G|18, 9TEX|1|Z|G|19, 9TEX|1|Z|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TEX_031 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.0815
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9TEX|1|Z|C|13
9TEX|1|Z|A|14
9TEX|1|Z|G|15
9TEX|1|Z|C|16
9TEX|1|Z|C|17
9TEX|1|Z|U|17|||A
9TEX|1|Z|G|18
9TEX|1|Z|G|19
9TEX|1|Z|U|20
9TEX|1|Z|A|21
9TEX|1|Z|G|22
Current chains
- Chain Z
- fMet-Initiator P-tRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
Coloring options: