HL_9TEZ_045

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

9TEZ|1|V|A|1913

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TEZ_045 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.0811

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9TEZ|1|V|G|1910
9TEZ|1|V|PSU|1911
9TEZ|1|V|A|1912
9TEZ|1|V|A|1913
9TEZ|1|V|C|1914
9TEZ|1|V|3TD|1915
9TEZ|1|V|A|1916
9TEZ|1|V|PSU|1917
9TEZ|1|V|A|1918
9TEZ|1|V|A|1919
9TEZ|1|V|C|1920

Current chains

Chain V

23S rRNA

Nearby chains

Chain W

Peptide chain release factor RF1

Chain Z

Transfer RNA; tRNA