HL_9TI6_016

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

9TI6|1|A|U|590, 9TI6|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI6_016 not in the Motif Atlas

Geometric match to HL_4WF9_017

Geometric discrepancy: 0.1142

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

9TI6|1|A|C|587
9TI6|1|A|G|588
9TI6|1|A|U|589
9TI6|1|A|U|590
9TI6|1|A|A|591
9TI6|1|A|A|592
9TI6|1|A|U|593
9TI6|1|A|G|594

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L13

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21