HL_9TI6_040

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9TI6|1|A|U|1737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI6_040 not in the Motif Atlas

Homologous match to HL_7A0S_042

Geometric discrepancy: 0.1483

The information below is about HL_7A0S_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9TI6|1|A|C|1735
9TI6|1|A|U|1736
9TI6|1|A|U|1737
9TI6|1|A|C|1738
9TI6|1|A|G|1739
9TI6|1|A|G|1740

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA