HL_9TI6_065

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

9TI6|1|A|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI6_065 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.4663

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9TI6|1|A|A|2839
9TI6|1|A|A|2840
9TI6|1|A|A|2841
9TI6|1|A|G|2842
9TI6|1|A|A|2843
9TI6|1|A|U|2844
9TI6|1|A|G|2845
9TI6|1|A|A|2846
9TI6|1|A|U|2847

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17