HL_9TI6_068

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

9TI6|1|B|G|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI6_068 not in the Motif Atlas

Homologous match to HL_4V9F_071

Geometric discrepancy: 0.2438

The information below is about HL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9TI6|1|B|C|36
9TI6|1|B|A|37
9TI6|1|B|U|38
9TI6|1|B|G|39
9TI6|1|B|C|40
9TI6|1|B|C|41
9TI6|1|B|G|42

Current chains

Chain B

5S rRNA

Nearby chains

Chain 4

50S ribosomal protein L31 type B

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain J

50S ribosomal protein L5

Chain R

50S ribosomal protein L18