HL_9TI6_084

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI6_084 not in the Motif Atlas

Geometric match to HL_4TUE_223

Geometric discrepancy: 0.3428

The information below is about HL_4TUE_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9TI6|1|a|A|470
9TI6|1|a|A|471
9TI6|1|a|G|472
9TI6|1|a|U|473
9TI6|1|a|A|474
9TI6|1|a|A|475
9TI6|1|a|C|476
9TI6|1|a|U|477
9TI6|1|a|G|478
9TI6|1|a|U|479

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16