HL_9TI7_012

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

9TI7|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI7_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3989

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9TI7|1|A|G|428
9TI7|1|A|C|429
9TI7|1|A|A|430
9TI7|1|A|C|431
9TI7|1|A|G|432
9TI7|1|A|U|433
9TI7|1|A|G|434
9TI7|1|A|A|435
9TI7|1|A|A|436
9TI7|1|A|A|437
9TI7|1|A|U|438

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain D

Transfer RNA; tRNA