HL_9TI7_080

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI7_080 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1362

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9TI7|1|a|A|328
9TI7|1|a|A|329
9TI7|1|a|C|330
9TI7|1|a|U|331
9TI7|1|a|G|332
9TI7|1|a|A|333
9TI7|1|a|G|334
9TI7|1|a|A|335
9TI7|1|a|C|336
9TI7|1|a|A|337
9TI7|1|a|C|338
9TI7|1|a|G|339
9TI7|1|a|G|340
9TI7|1|a|U|341

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20