HL_9TI8_012

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

9TI8|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI8_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.4091

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9TI8|1|A|G|428
9TI8|1|A|C|429
9TI8|1|A|A|430
9TI8|1|A|C|431
9TI8|1|A|G|432
9TI8|1|A|U|433
9TI8|1|A|G|434
9TI8|1|A|A|435
9TI8|1|A|A|436
9TI8|1|A|A|437
9TI8|1|A|U|438

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28