HL_9TI8_038

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9TI8|1|A|A|1660, 9TI8|1|A|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI8_038 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0939

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9TI8|1|A|C|1656
9TI8|1|A|G|1657
9TI8|1|A|A|1658
9TI8|1|A|C|1659
9TI8|1|A|A|1660
9TI8|1|A|C|1661
9TI8|1|A|A|1662
9TI8|1|A|G|1663

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain V

50S ribosomal protein L22