HL_9TI8_039

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

9TI8|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI8_039 not in the Motif Atlas

Geometric match to HL_4WF9_039

Geometric discrepancy: 0.0617

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9TI8|1|A|A|1673
9TI8|1|A|U|1674
9TI8|1|A|G|1675
9TI8|1|A|A|1676
9TI8|1|A|G|1677
9TI8|1|A|A|1678
9TI8|1|A|A|1679
9TI8|1|A|U|1680
9TI8|1|A|U|1681

Current chains

Chain A

23S rRNA

Nearby chains