HL_9TI8_043

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

UUUAUCAAAAA

Length

11 nucleotides

Bulged bases

9TI8|1|A|A|1807, 9TI8|1|A|U|1808, 9TI8|1|A|C|1809, 9TI8|1|A|A|1813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI8_043 not in the Motif Atlas

Geometric match to HL_8B0X_073

Geometric discrepancy: 0.0431

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.3

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

9TI8|1|A|U|1804
9TI8|1|A|U|1805
9TI8|1|A|U|1806
9TI8|1|A|A|1807
9TI8|1|A|U|1808
9TI8|1|A|C|1809
9TI8|1|A|A|1810
9TI8|1|A|A|1811
9TI8|1|A|A|1812
9TI8|1|A|A|1813
9TI8|1|A|A|1814

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2