HL_9TI8_061

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI8_061 not in the Motif Atlas

Homologous match to HL_7A0S_063

Geometric discrepancy: 0.0854

The information below is about HL_7A0S_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9TI8|1|A|C|2685
9TI8|1|A|G|2686
9TI8|1|A|A|2687
9TI8|1|A|G|2688
9TI8|1|A|A|2689
9TI8|1|A|G|2690

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Elongation factor G

Chain K

Large ribosomal subunit protein uL6