HL_9TI9_012

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

9TI9|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI9_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.4144

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9TI9|1|A|G|428
9TI9|1|A|C|429
9TI9|1|A|A|430
9TI9|1|A|C|431
9TI9|1|A|G|432
9TI9|1|A|U|433
9TI9|1|A|G|434
9TI9|1|A|A|435
9TI9|1|A|A|436
9TI9|1|A|A|437
9TI9|1|A|U|438

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain D

Transfer RNA; tRNA