HL_9TI9_020

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

9TI9|1|A|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI9_020 not in the Motif Atlas

Geometric match to HL_9DFE_019

Geometric discrepancy: 0.094

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9TI9|1|A|U|686
9TI9|1|A|G|687
9TI9|1|A|A|688
9TI9|1|A|A|689
9TI9|1|A|U|690
9TI9|1|A|A|691
9TI9|1|A|G|692

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL33A

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15