HL_9TI9_082

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI9_082 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1826

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9TI9|1|a|A|328
9TI9|1|a|A|329
9TI9|1|a|C|330
9TI9|1|a|U|331
9TI9|1|a|G|332
9TI9|1|a|A|333
9TI9|1|a|G|334
9TI9|1|a|A|335
9TI9|1|a|C|336
9TI9|1|a|A|337
9TI9|1|a|C|338
9TI9|1|a|G|339
9TI9|1|a|G|340
9TI9|1|a|U|341

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20