HL_9TI9_086

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI9_086 not in the Motif Atlas

Geometric match to HL_4TUE_223

Geometric discrepancy: 0.346

The information below is about HL_4TUE_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9TI9|1|a|A|470
9TI9|1|a|A|471
9TI9|1|a|G|472
9TI9|1|a|U|473
9TI9|1|a|A|474
9TI9|1|a|A|475
9TI9|1|a|C|476
9TI9|1|a|U|477
9TI9|1|a|G|478
9TI9|1|a|U|479

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16