HL_9TI9_102

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GAUCAGCAUGC

Length

11 nucleotides

Bulged bases

9TI9|1|a|U|1374

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TI9_102 not in the Motif Atlas

Homologous match to HL_6CZR_101

Geometric discrepancy: 0.4153

The information below is about HL_6CZR_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9TI9|1|a|G|1366
9TI9|1|a|A|1367
9TI9|1|a|U|1368
9TI9|1|a|C|1369
9TI9|1|a|A|1370
9TI9|1|a|G|1371
9TI9|1|a|C|1372
9TI9|1|a|A|1373
9TI9|1|a|U|1374
9TI9|1|a|G|1375
9TI9|1|a|C|1376

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain k

Small ribosomal subunit protein uS10

Chain o

30S ribosomal protein S14 type Z