HL_9TKV_001

3D structure

PDB id

9TKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of duck RIG-I (delta CARDS) bound to 31-mer RNA mismatched hairpin with 5'pppG-C blunt end, mimicking the influenza B virus vRNA promoter (panhandle).

Experimental method

X-RAY DIFFRACTION

Resolution

1.488 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TKV_001 not in the Motif Atlas

Geometric match to HL_7OZQ_004

Geometric discrepancy: 0.0928

The information below is about HL_7OZQ_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9TKV|1|R|G|14
9TKV|1|R|G|15
9TKV|1|R|A|16
9TKV|1|R|A|17
9TKV|1|R|A|18
9TKV|1|R|C|19

Current chains

Chain R

31-mer RNA hairpin with 5'pppG-C blunt end mimicking the influenza B virus vRNA promoter (panhandle)

Nearby chains

Chain A

RNA helicase