HL_9TMI_011

3D structure

PDB id

9TMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9TMI|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TMI_011 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.201

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9TMI|1|A|G|462
9TMI|1|A|U|463
9TMI|1|A|U|464
9TMI|1|A|A|465
9TMI|1|A|A|466
9TMI|1|A|U|467
9TMI|1|A|A|468
9TMI|1|A|C|469
9TMI|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains