HL_9TMI_096

3D structure

PDB id

9TMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9TMI|1|a|U|2797, 9TMI|1|a|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TMI_096 not in the Motif Atlas

Geometric match to HL_8OI5_017

Geometric discrepancy: 0.3067

The information below is about HL_8OI5_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

9TMI|1|a|C|2795
9TMI|1|a|U|2796
9TMI|1|a|U|2797
9TMI|1|a|U|2798
9TMI|1|a|A|2799
9TMI|1|a|A|2800
9TMI|1|a|G|2801

Current chains

Chain a

23S rRNA

Nearby chains