HL_9TQA_028

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9TQA|1|A|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TQA_028 not in the Motif Atlas

Geometric match to HL_9FN2_003

Geometric discrepancy: 0.107

The information below is about HL_9FN2_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9TQA|1|A|C|1449
9TQA|1|A|U|1450
9TQA|1|A|U|1451
9TQA|1|A|C|1452
9TQA|1|A|G|1453
9TQA|1|A|G|1454

Current chains

Chain A

16S rRNA

Nearby chains