HL_9TQA_033
3D structure
- PDB id
- 9TQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TQA_033 not in the Motif Atlas
- Homologous match to HL_2ZUE_003
- Geometric discrepancy: 0.0748
- The information below is about HL_2ZUE_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9TQA|1|Z|G|53
9TQA|1|Z|5MU|54
9TQA|1|Z|PSU|55
9TQA|1|Z|C|56
9TQA|1|Z|A|57
9TQA|1|Z|A|58
9TQA|1|Z|A|59
9TQA|1|Z|U|60
9TQA|1|Z|C|61
Current chains
- Chain Z
- P-site tRNA^fMet
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: