HL_9TQA_054

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TQA_054 not in the Motif Atlas

Geometric match to HL_8B0X_052

Geometric discrepancy: 0.0567

The information below is about HL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9TQA|1|a|G|712
9TQA|1|a|G|713
9TQA|1|a|U|714
9TQA|1|a|A|715
9TQA|1|a|A|716
9TQA|1|a|C|717
9TQA|1|a|A|718
9TQA|1|a|C|719

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain O

Small ribosomal subunit protein uS15

Chain c

Large ribosomal subunit protein uL2