HL_9TT7_042

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9TT7|1|L5|A|4200, 9TT7|1|L5|C|4207

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TT7|1|L5|U|4196
9TT7|1|L5|C|4197
9TT7|1|L5|A|4198
9TT7|1|L5|A|4199
9TT7|1|L5|A|4200
9TT7|1|L5|C|4201
9TT7|1|L5|G|4202
9TT7|1|L5|G|4203
9TT7|1|L5|U|4204
9TT7|1|L5|A|4205
9TT7|1|L5|6MZ|4206
9TT7|1|L5|C|4207
9TT7|1|L5|G|4208

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29