HL_9TT7_052

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9TT7|1|L5|G|4680, 9TT7|1|L5|C|4684

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TT7|1|L5|C|4674
9TT7|1|L5|PSU|4675
9TT7|1|L5|G|4676
9TT7|1|L5|A|4677
9TT7|1|L5|A|4678
9TT7|1|L5|C|4679
9TT7|1|L5|G|4680
9TT7|1|L5|C|4681
9TT7|1|L5|C|4682
9TT7|1|L5|U|4683
9TT7|1|L5|C|4684
9TT7|1|L5|U|4685
9TT7|1|L5|A|4686
9TT7|1|L5|A|4687
9TT7|1|L5|G|4688

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40