HL_9TV2_009

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TV2_009 not in the Motif Atlas

Homologous match to HL_8GLP_010

Geometric discrepancy: 0.0339

The information below is about HL_8GLP_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9TV2|1|L5|C|368
9TV2|1|L5|G|369
9TV2|1|L5|U|370
9TV2|1|L5|A|371
9TV2|1|L5|A|372
9TV2|1|L5|G|373

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

60S ribosomal protein L39