HL_9TV2_029

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

9TV2|1|L5|U|2621

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TV2_029 not in the Motif Atlas

Homologous match to HL_9PN5_036

Geometric discrepancy: 0.2068

The information below is about HL_9PN5_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22758.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9TV2|1|L5|G|2614
9TV2|1|L5|U|2615
9TV2|1|L5|U|2616
9TV2|1|L5|C|2617
9TV2|1|L5|U|2618
9TV2|1|L5|C|2619
9TV2|1|L5|U|2620
9TV2|1|L5|U|2621
9TV2|1|L5|PSU|2622

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22