HL_9TV2_039

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9TV2|1|L5|U|3788

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TV2_039 not in the Motif Atlas

Homologous match to HL_8GLP_054

Geometric discrepancy: 0.0528

The information below is about HL_8GLP_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9TV2|1|L5|U|3782
9TV2|1|L5|C|3783
9TV2|1|L5|U|3784
9TV2|1|L5|A|3785
9TV2|1|L5|A|3786
9TV2|1|L5|U|3787
9TV2|1|L5|U|3788
9TV2|1|L5|A|3789
9TV2|1|L5|G|3790

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA